Difference between revisions of "User:DukeEgr93/SNIPR"
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(→Check MATLAAB) |
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| Line 11: | Line 11: | ||
sudo apt-get install mlocate | sudo apt-get install mlocate | ||
sudo apt-get install git | sudo apt-get install git | ||
| + | * Also need to be using gcc-9; if 10 is installed: | ||
| + | sudo apt install gcc-9 g++-9 | ||
| + | sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-9 100 --slave /usr/bin/g++ g++ /usr/bin/g++-9 --slave /usr/bin/gcov gcov /usr/bin/gcov-9 | ||
| + | sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-10 90 --slave /usr/bin/g++ g++ /usr/bin/g++-10 --slave /usr/bin/gcov gcov /usr/bin/gcov-10 | ||
| + | |||
=== MATLAB === | === MATLAB === | ||
| Line 19: | Line 24: | ||
sudo ./install | sudo ./install | ||
* Need to have MATLAB, Simulink, Bioinformatics, Robust Control, Statistics and Machine Learning, and Control System Toolbox. | * Need to have MATLAB, Simulink, Bioinformatics, Robust Control, Statistics and Machine Learning, and Control System Toolbox. | ||
| − | ** Note: | + | ** Note: If you didn't install the right toolboxes, to be able to add toolboxes later, in UNIX: |
sudo apt-get install libgconf-2-4 | sudo apt-get install libgconf-2-4 | ||
| − | cd /usr/local | + | cd /usr/local/MATLAB/R2017b/bin/glnxa64 |
sudo mkdir exclude | sudo mkdir exclude | ||
sudo mv libfreetype.so.6 exclude | sudo mv libfreetype.so.6 exclude | ||
| Line 42: | Line 47: | ||
sudo make | sudo make | ||
sudo make install | sudo make install | ||
| − | ::Sooooo many warnings with | + | ::Sooooo many warnings with make |
| − | === Prepare Shell == | + | === Prepare Shell === |
| − | * Edit ~/.bash_profile and add | + | * Edit ~/.bash_profile and add lines; use |
| + | pico ~/.bash_profile | ||
| + | : in the terminal, add the lines: | ||
export LD_LIBRARY_PATH=/usr/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu | export LD_LIBRARY_PATH=/usr/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu | ||
alias matlab='/usr/local/MATLAB/R2017b/bin/matlab' | alias matlab='/usr/local/MATLAB/R2017b/bin/matlab' | ||
| − | * First time you do this, | + | : then save and exit |
| + | * First time you do this, in the terminal type | ||
source ~/.bash_profile | source ~/.bash_profile | ||
| − | === Check | + | === Check MATLAB === |
* Run MATLAB | * Run MATLAB | ||
matlab | matlab | ||
* Try to run multitubedesign | * Try to run multitubedesign | ||
system('multitubedesign') | system('multitubedesign') | ||
| − | |||
=== SNIPR === | === SNIPR === | ||
Latest revision as of 23:17, 23 February 2021
Contents
Ubuntu on a VirtualBox
Virtual Machine
- Created a machine in VirtualBox Manager using New; 8 GB Ram; 100 GB VDI drive fixed size for speed
- Downloaded Ubuntu from Ubuntu and installed it
- After installation, stop the machine and remove the optical ISO if need be
- Need to install:
sudo apt-get install gcc sudo apt-get install g++ sudo apt-get install cmake sudo apt-get install mlocate sudo apt-get install git
- Also need to be using gcc-9; if 10 is installed:
sudo apt install gcc-9 g++-9 sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-9 100 --slave /usr/bin/g++ g++ /usr/bin/g++-9 --slave /usr/bin/gcov gcov /usr/bin/gcov-9 sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-10 90 --slave /usr/bin/g++ g++ /usr/bin/g++-10 --slave /usr/bin/gcov gcov /usr/bin/gcov-10
MATLAB
- Used Firefox to connect to MATLAB, downloaded and saved to Downloads
- Extract and install:
cd ~/.Downloads unzip matlab_R2017b_glnxa64.zip sudo ./install
- Need to have MATLAB, Simulink, Bioinformatics, Robust Control, Statistics and Machine Learning, and Control System Toolbox.
- Note: If you didn't install the right toolboxes, to be able to add toolboxes later, in UNIX:
sudo apt-get install libgconf-2-4 cd /usr/local/MATLAB/R2017b/bin/glnxa64 sudo mkdir exclude sudo mv libfreetype.so.6 exclude
- From MATLAB's help site
- Move libstdc++.so so it does not interfere with the new one
cd /usr/local/MATLAB/R2017b/sys/os/glnxa64 sudo mv libstdc++.so.6 libstdc++.so.6.OLD
NUPACK
- NUPACK
- Registered
- Downloaded and saved to Downloads
cd ~/Downloads gunzip nupack3.2.2.tar.gz tar -xvf nupack3.2.2.tar cd nupack3.2.2 mkdir build cd build sudo cmake ../ sudo make sudo make install
- Sooooo many warnings with make
Prepare Shell
- Edit ~/.bash_profile and add lines; use
pico ~/.bash_profile
- in the terminal, add the lines:
export LD_LIBRARY_PATH=/usr/lib:/usr/local/lib:/usr/lib/x86_64-linux-gnu alias matlab='/usr/local/MATLAB/R2017b/bin/matlab'
- then save and exit
- First time you do this, in the terminal type
source ~/.bash_profile
Check MATLAB
- Run MATLAB
matlab
- Try to run multitubedesign
system('multitubedesign')
SNIPR
- Change into home
cd
- Get github repository
git clone https://github.com/Albert09111/SNIPR/
- Change into SNIPR Folder
cd SNIPR
- Run MATLAB (assumes alias is working)
matlab &
- In MATLAB, run SNIPR
SNIPR
